Bioconductor Co-expression network

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WGCNA rnaseq gene expression co-expression network

updated 6.8 years ago by Peter Langfelder ★ 3.0k • written 6.8 years ago by davidjameswheatcroft ▴ 10

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wgcna picksoftthreshold scale-free topology co-expression network

6.8 years ago marcantoine.guery • 0

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LRT co-expression network deseq2 time course experiment network analysis

updated 20 months ago by Jennifer Dehner • 0 • written 6.8 years ago by aishu.jp ▴ 30

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WGCNA co-expression network RNA-Seq

6.9 years ago wangdp123 • 0

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WGCNA RNA-seq co-expression network module clustering

updated 7.9 years ago by Peter Langfelder ★ 3.0k • written 7.9 years ago by xie186 • 0

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

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Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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